Flowering in aerogarden

i am on my second day of flowering in my aerogarden 12/12 on my 12 off the pump bubbling the water turns off bc my aerogarden is off, but when the light come on for the 12 on the pump goes back on.. will this hurt my plants if its not on 24/7?

also i am using my light that came with the aerogarden plus two 40 watt 2700k cfl on the sides,

can some one help me with usefull advice.. this is my first time with a female and i dont waNT to mess it up

i have never had to flower before.. thank you for your time, i appreciate it

you can hook your lights and AG base into different outlets, with different timers/setups as you like

The AG base uses a regular socket and plug.
the AG lights use a "Figure-8" style power cord, just like the kind on a Playstation, PS2, Xbox, etc.
You can also buy these at Radio Shack or any store for a few bucks.

The pumps should run 24 hours per day.