Can be P def. but most likely just a trait of your strain. If everything looks healthy and is growing at a decent rate, red/purple stems isn't normally a problem. If you see reddish stems, AND your new growth is small / stunted and twisted, AND you see slowed/stunted growth overall, it
might be something to worry about. Sometimes low temps can display signs/symptoms of phosphorus def. because it's harder for the plant to utilize P in low temperatures.
http://www.growweedeasy.com/phosphorus-deficiency-cannabis
I'm no expert, but I've seen plenty of healthy plants with pinkish/reddish/purple stems.
In addition to cold temps, pH being off can also make P less available.
What are your temps like at the root zone? You said at the "bottom" but I'm not sure if you mean the base of the plant or at the base of your pot or what. it sounds like you got your temps in check, so like Dia was hinting at it might be a pH issue...or also it could just be nothing