use the CFL's with the most power all the way through. plants prefer blue anyway.
Only reason blue is bad for HID is bulb life and more heat than HPS.... but the blue light from CFL will be far more beneficial than the red CFL no matter the stage of growth. a photon is a photon, a blue photon is more potent than a red one. CFL's are not very good for flower, so better off using the more powerful blue bulbs all the way through.