Its common for fan hum if you use a speed controller which works by switching between on and off many times a second.
Those speed controllers work just better with certain motor types.
A variable transformer will work without creating the hum but they cost 5-10 times the coin.
Like OMU says, contact the manufacturer of both controller and fan, im sure they will give you a more detailed explanation of the situation. I do think it wot be a problem as long as you can live with the hum.