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They could be using the energy from the lower leaves to build their root system if they don't have enough food in the soil. The one you showed in the veg state that's older have you been feeding it with anything? It looks nitrogen starved. Personally I don't worry so much about the lower leaves as they will be removed later or I'll use the lower branches for clones. I don't know anything about the soil your using. I use Fox Farm.
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